Banner

GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THYM cis rs1577917 1 rs13196930 chr6:86652245 SNHG5 chr6:86386726-86388451:- -0.6 -7.24 1.15E-10 Response to antipsychotic treatment
THYM cis rs1577917 1 rs13199006 chr6:86608708 SNHG5 chr6:86386726-86388451:- -0.57 -7.62 1.9E-11 Response to antipsychotic treatment
THYM cis rs1577917 1 rs13217384 chr6:86720000 SNHG5 chr6:86386726-86388451:- -0.57 -6.89 5.95E-10 Response to antipsychotic treatment
THYM cis rs2243480 1 rs13220979 chr7:65363204 CCT6P1 chr7:65216092-65228661:+ 0.64 4.78 6.3E-6 Diabetic kidney disease
THYM cis rs2243480 1 rs13235972 chr7:65883605 CCT6P1 chr7:65216092-65228661:+ 0.59 4.86 4.58E-6 Diabetic kidney disease
THYM cis rs2243480 1 rs13237037 chr7:65997882 CCT6P1 chr7:65216092-65228661:+ 0.59 4.86 4.58E-6 Diabetic kidney disease
THYM cis rs2243480 1 rs13247184 chr7:65358928 CCT6P1 chr7:65216092-65228661:+ 0.68 5.01 2.55E-6 Diabetic kidney disease
THYM cis rs1325195 1 rs1325195 chr1:179071756 ABL2 chr1:179068463-179198819:- -0.32 -4.23 5.44E-5 IgE grass sensitization
THYM cis rs7017914 1 rs13252719 chr8:71734569 XKR9 chr8:71581600-71648176:+ 0.84 10.7 5.33E-18 Bone mineral density
THYM cis rs7017914 1 rs13253842 chr8:71625503 XKR9 chr8:71581600-71648176:+ 0.84 10.55 1.11E-17 Bone mineral density
THYM cis rs1364705 1 rs13262685 chr8:120226145 MAL2 chr8:120220610-120257911:+ 0.42 4.42 2.6E-5 Hippocampal atrophy
THYM cis rs2243480 1 rs13310597 chr7:65598540 CCT6P1 chr7:65216092-65228661:+ 0.64 5.31 7.1E-7 Diabetic kidney disease
THYM cis rs9876781 1 rs13314659 chr3:48449149 TREX1 chr3:48501186-48509043:+ 0.29 4.43 2.49E-5 Longevity
THYM cis rs10935120 1 rs13322305 chr3:134310791 ANAPC13 chr3:134196547-134204865:- 0.55 7.48 3.7E-11 Height
THYM cis rs10935120 1 rs13322305 chr3:134310791 CEP63 chr3:134204575-134293852:+ 0.43 6.36 7.09E-9 Height